vg::CompletedTranscriptPath Struct Reference

#include <transcriptome.hpp>

Inheritance diagram for vg::CompletedTranscriptPath:

Public Member Functions
	CompletedTranscriptPath (const EditedTranscriptPath &edited_transcript_path)
	CompletedTranscriptPath (const EditedTranscriptPath &edited_transcript_path, const HandleGraph &graph)
	~CompletedTranscriptPath ()
handle_t	get_first_node_handle (const HandleGraph &graph) const
Public Member Functions inherited from vg::TranscriptPath
	TranscriptPath ()
	TranscriptPath (const string &transcript_name, const string &embedded_path_name, const bool is_reference_in, const bool is_haplotype_in)
	TranscriptPath (const string &transcript_name, const gbwt::size_type &haplotype_gbwt_id, const bool is_reference_in, const bool is_haplotype_in)
virtual	~TranscriptPath ()
string	get_name () const

Public Attributes
vector< handle_t >	path
	Transcript path.
Public Attributes inherited from vg::TranscriptPath
vector< string >	transcript_names
	Transcript names.
vector< pair< string, bool > >	embedded_path_names
	Embedded path names and reference path origin.
vector< pair< gbwt::size_type, bool > >	haplotype_gbwt_ids
	Haplotype gbwt ids and reference path origin.
uint32_t	copy_id
	Copy id of transcript path.
bool	is_reference
	Is it a reference and/or haplotype-specific transcript path.
bool	is_haplotype

Detailed Description

Data structure that defines a completed transcript path.

Constructor & Destructor Documentation

CompletedTranscriptPath() [1/2]

vg::CompletedTranscriptPath::CompletedTranscriptPath

(

const EditedTranscriptPath &

edited_transcript_path

)

CompletedTranscriptPath() [2/2]

vg::CompletedTranscriptPath::CompletedTranscriptPath	(	const EditedTranscriptPath &	edited_transcript_path,
		const HandleGraph &	graph )

~CompletedTranscriptPath()

vg::CompletedTranscriptPath::~CompletedTranscriptPath ( )

inline

Member Function Documentation

get_first_node_handle()

handle_t vg::CompletedTranscriptPath::get_first_node_handle

(

const HandleGraph &

graph

)

const

Member Data Documentation

path

vector<handle_t> vg::CompletedTranscriptPath::path

Transcript path.

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The documentation for this struct was generated from the following files:

• src/transcriptome.hpp
• src/transcriptome.cpp